Index A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | R | S | T | U | W | X | Y A adaptive_batching (slide2vec.PreprocessingConfig attribute) aggregate_tiles() (slide2vec.Model method) annotation (slide2vec.DenseRegionArtifact attribute) (slide2vec.EmbeddedSlide attribute) (slide2vec.HierarchicalEmbeddingArtifact attribute) (slide2vec.SlideEmbeddingArtifact attribute) (slide2vec.SlideRegions attribute) (slide2vec.TileEmbeddingArtifact attribute) attention_blocks (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) attention_include_registers (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) B backend (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) (slide2vec.PreprocessingConfig attribute) batch_size (slide2vec.ExecutionOptions attribute) C compatible artifact concise() (slide2vec.EncoderProviderDiagnostic method) coordinates (slide2vec.SlideRegions attribute) crop_box (slide2vec.DenseEncodeGeometry attribute) D declared spacing DenseEncodeGeometry (class in slide2vec) DenseEncodeKit (class in slide2vec) DenseImageArtifact (class in slide2vec) DenseImageOptions (class in slide2vec) DenseOptions (class in slide2vec) DenseRegionArtifact (class in slide2vec) device (slide2vec.Model property) E effective spacing embed_images() (slide2vec.Model method) embed_images_dense() (slide2vec.Model method) embed_patient() (slide2vec.Model method) embed_patients() (slide2vec.Model method) embed_regions_dense() (slide2vec.Model method) embed_slide() (slide2vec.Model method) embed_slides() (slide2vec.Model method) embed_tiles() (slide2vec.Model method) EmbeddedPatient (class in slide2vec) EmbeddedSlide (class in slide2vec) encode() (slide2vec.DenseEncodeKit method) encoded_size (slide2vec.DenseEncodeGeometry attribute) encoder_input_size_px (slide2vec.EmbeddedSlide attribute) EncoderProviderDiagnostic (class in slide2vec) exception_type (slide2vec.EncoderProviderDiagnostic attribute) ExecutionOptions (class in slide2vec) F feature_dim (slide2vec.DenseImageArtifact attribute) (slide2vec.DenseRegionArtifact attribute) (slide2vec.HierarchicalEmbeddingArtifact attribute) (slide2vec.ImageEmbeddingArtifact attribute) (slide2vec.Model property) (slide2vec.SlideEmbeddingArtifact attribute) (slide2vec.TileEmbeddingArtifact attribute) feature_kind (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) filtering (slide2vec.PreprocessingConfig attribute) format (slide2vec.HierarchicalEmbeddingArtifact attribute) (slide2vec.ImageEmbeddingArtifact attribute) (slide2vec.SlideEmbeddingArtifact attribute) (slide2vec.TileEmbeddingArtifact attribute) from_preset() (slide2vec.Model class method) G geometry (slide2vec.DenseEncodeKit property) gpu_decode (slide2vec.PreprocessingConfig attribute) grid_shape (slide2vec.DenseEncodeGeometry attribute) (slide2vec.DenseImageArtifact attribute) (slide2vec.DenseRegionArtifact attribute) H hierarchical_artifacts (slide2vec.RunResult attribute) HierarchicalEmbeddingArtifact (class in slide2vec) I image_pad_value (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) image_path (slide2vec.EmbeddedSlide attribute) (slide2vec.ImageSpec attribute) (slide2vec.SlideRegions attribute) ImageEmbeddingArtifact (class in slide2vec) ImageSpec (class in slide2vec) independent_sampling (slide2vec.PreprocessingConfig attribute) J jpeg_backend (slide2vec.PreprocessingConfig attribute) L latent_path (slide2vec.SlideEmbeddingArtifact attribute) latents (slide2vec.EmbeddedSlide attribute) list_encoder_provider_diagnostics() (in module slide2vec) M mask_backend (slide2vec.PreprocessingConfig attribute) mask_path (slide2vec.EmbeddedSlide attribute) mask_preview_path (slide2vec.EmbeddedSlide attribute) masks (slide2vec.PreprocessingConfig attribute) message (slide2vec.EncoderProviderDiagnostic attribute) metadata (slide2vec.DenseImageArtifact property) (slide2vec.DenseRegionArtifact property) (slide2vec.HierarchicalEmbeddingArtifact property) (slide2vec.ImageEmbeddingArtifact property) (slide2vec.SlideEmbeddingArtifact property) (slide2vec.TileEmbeddingArtifact property) metadata_path (slide2vec.DenseImageArtifact attribute) (slide2vec.DenseRegionArtifact attribute) (slide2vec.HierarchicalEmbeddingArtifact attribute) (slide2vec.ImageEmbeddingArtifact attribute) (slide2vec.SlideEmbeddingArtifact attribute) (slide2vec.TileEmbeddingArtifact attribute) Model (class in slide2vec) N num_cucim_workers (slide2vec.PreprocessingConfig attribute) num_gpus (slide2vec.ExecutionOptions attribute) num_preprocessing_workers (slide2vec.ExecutionOptions attribute) num_regions (slide2vec.HierarchicalEmbeddingArtifact attribute) num_tiles (slide2vec.EmbeddedSlide attribute) (slide2vec.TileEmbeddingArtifact attribute) num_workers_per_gpu (slide2vec.ExecutionOptions attribute) O on_the_fly (slide2vec.PreprocessingConfig attribute) output_dir (slide2vec.ExecutionOptions attribute) output_dtype (slide2vec.ExecutionOptions attribute) output_format (slide2vec.ExecutionOptions attribute) overlap (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) (slide2vec.PreprocessingConfig attribute) P pad (slide2vec.DenseEncodeGeometry attribute) pad_mode (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) patch_size (slide2vec.DenseEncodeGeometry attribute) path (slide2vec.DenseImageArtifact attribute) (slide2vec.DenseRegionArtifact attribute) (slide2vec.HierarchicalEmbeddingArtifact attribute) (slide2vec.ImageEmbeddingArtifact attribute) (slide2vec.SlideEmbeddingArtifact attribute) (slide2vec.TileEmbeddingArtifact attribute) patient_artifacts (slide2vec.RunResult attribute) patient_embedding (slide2vec.EmbeddedPatient attribute) patient_id (slide2vec.EmbeddedPatient attribute) Pipeline (class in slide2vec) precision (slide2vec.ExecutionOptions attribute) prefetch_factor (slide2vec.ExecutionOptions attribute) prepare_dense_encoder() (slide2vec.Model method) PreprocessingConfig (class in slide2vec) preprocessor() (slide2vec.DenseEncodeKit method) preview (slide2vec.PreprocessingConfig attribute) process_list_path (slide2vec.RunResult attribute) provider (slide2vec.EncoderProviderDiagnostic attribute) provider_key (slide2vec.EncoderProviderDiagnostic attribute) R raster image read_coordinates_from (slide2vec.PreprocessingConfig attribute) read_tiles_from (slide2vec.PreprocessingConfig attribute) region_tile_multiple (slide2vec.PreprocessingConfig attribute) requested_region_size_px (slide2vec.PreprocessingConfig attribute) requested_spacing_um (slide2vec.PreprocessingConfig attribute) requested_tile_size_px (slide2vec.PreprocessingConfig attribute) resume (slide2vec.PreprocessingConfig attribute) run() (slide2vec.Pipeline method) run_with_coordinates() (slide2vec.Pipeline method) RunResult (class in slide2vec) S sample_id (slide2vec.DenseImageArtifact attribute) (slide2vec.DenseRegionArtifact attribute) (slide2vec.EmbeddedSlide attribute) (slide2vec.HierarchicalEmbeddingArtifact attribute) (slide2vec.ImageEmbeddingArtifact attribute) (slide2vec.ImageSpec attribute) (slide2vec.SlideEmbeddingArtifact attribute) (slide2vec.SlideRegions attribute) (slide2vec.TileEmbeddingArtifact attribute) save_latents (slide2vec.ExecutionOptions attribute) save_slide_embeddings (slide2vec.ExecutionOptions attribute) save_tile_embeddings (slide2vec.ExecutionOptions attribute) segmentation (slide2vec.PreprocessingConfig attribute) slide_artifacts (slide2vec.RunResult attribute) slide_embedding (slide2vec.EmbeddedSlide attribute) slide_embeddings (slide2vec.EmbeddedPatient attribute) SlideEmbeddingArtifact (class in slide2vec) SlideRegions (class in slide2vec) source spacing source-spacing declaration spacing-readable image spacing_at_level_0 (slide2vec.ImageSpec attribute) (slide2vec.SlideRegions attribute) spacing_um (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) T target size target_size (slide2vec.DenseEncodeGeometry attribute) (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) tile_artifacts (slide2vec.RunResult attribute) tile_embeddings (slide2vec.EmbeddedSlide attribute) tile_size_lv0 (slide2vec.EmbeddedSlide attribute) TileEmbeddingArtifact (class in slide2vec) tiles_per_region (slide2vec.HierarchicalEmbeddingArtifact attribute) tiling_preview_path (slide2vec.EmbeddedSlide attribute) tolerance (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) (slide2vec.PreprocessingConfig attribute) U use_supertiles (slide2vec.PreprocessingConfig attribute) W window_size (slide2vec.DenseImageOptions attribute) (slide2vec.DenseOptions attribute) X x (slide2vec.DenseRegionArtifact attribute) (slide2vec.EmbeddedSlide attribute) Y y (slide2vec.DenseRegionArtifact attribute) (slide2vec.EmbeddedSlide attribute)